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UF team finds ‘alligator tree’ bacteria might improve cellulosic ethanol production

GAINESVILLE, Fla. — Most would identify the tree by its often troublesome, spiky “gumballs,” but what many call the sweetgum tree also goes by another name, thanks to its distinctive, reptilian bark: the alligator tree.

So it may be fitting that researchers from the University of Florida, home of the Gators, have found that bacteria growing in its wood may improve the process of making the fuel that might help solve the nation’s energy crisis.

Cellulosic ethanol fuel is derived from plant material often thrown away as trash. Typically, the processes use genetically engineered bacteria or tricky chemical reactions to break down complex compounds in plant cell walls to produce simple sugar molecules that can be fermented into fuel-grade alcohol.

A February report by the Sandia National Laboratories predicted that cellulosic ethanol could replace 30 percent of the nation’s gasoline by 2030 if the price can be brought down. A big part of reducing the price is making production more efficient.

Much of the inefficiency in cellulosic ethanol production lies in the fact that it must be given a head start by cooking the plant material with heat and acids to break down some of the components in the plant cell walls.
As the team from UF’s Institute of Food and Agricultural Sciences reported in the July issue of the journal Applied and Environmental Microbiology, a strain of the wood-decaying Paenibacillus sp. bacteria named JDR-2 has a knack for breaking down and digesting one of these components, hemicelluloses.

That knack could help modify preprocessing steps for cost-effective production of ethanol.

“The acids, the heating-all of these steps you have to take beforehand are expensive, require a lot of work and, let’s face it, no one wants to work with sulfuric acid on that scale if you don’t have to,” said James Preston, the team leader and a professor in UF’s microbiology and cell science department.

“By engineering the bacteria already being used to produce ethanol to also process hemicelluloses the way this Paenibacillus does, you should be able to significantly simplify the process.”

Preston came across the bacteria a few years ago, as he was using decaying sweetgum trees to grow shiitake mushrooms on his tree farm in Micanopy, Fla. After studying the unusually uniform composition of the decaying wood, he and his colleagues went on to study the genetics of one of the bacteria digesting that wood.

The team has now mapped JDR-2’s genome, and Preston expects that, within the year, they will transfer genes behind JDR-2’s abilities to bacteria used to produce ethanol. This would be followed by the design of processes for the cost-effective production of ethanol from wood, agricultural residues and other potential energy crops.



Writer: Stu Hutson, 352-392-0400,

Source: James Preston, 352-392-5923,